For those of you playing along at home, you can now figure out exactly how the Read or Die timeline maps to the Shineverse. (Caution: link contains massive R.O.D spoilers, and therefore some Shine spoilers as well.)

Integra: I need as much information as possible. Who was responsible? How did they overpower Agent Paper?

Walter: They didn’t have to, sir.

Agent Paper was the one who set the fire.